RGraphSpace: A lightweight package for representing large igraph objects in a normalized coordinate system.Updated 2 months ago

Sysbiolab - Bioinformatics and Systems Biology Laboratory

Rendered from RGraphSpace.Rmd in RGraphSpace 1.0.6.
PathwaySpace: Spatial projection of network signals along geodesic paths.Updated 2 months ago

The Cancer Genome Atlas Analysis Network.

Rendered from PathwaySpace.Rmd in PathwaySpace 0.99.3.
RedeR: bridging network analysis and visualizationUpdated 8 months ago

Sysbiolab - Bioinformatics and Systems Biology Laboratory.

Rendered from RedeR.Rmd in RedeR 3.1.0.
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons.Updated 11 months ago

Clarice Groeneveld [ctb], Gordon Robertson [ctb], Xin Wang [aut], Michael Fletcher [aut], Florian Markowetz [aut], Kerstin Meyer [aut], and Mauro Castro [aut].

Rendered from RTN.Rmd in RTN 2.29.0.
Geneplast: large-scale evolutionary analysis of orthologous groups.Updated 1 years ago

Rodrigo JS Dalmolin, Sheyla Trefflich, Diego AA Morais, Mauro AA Castro.

Rendered from geneplast.Rmd in geneplast 1.31.0.
RTNduals: analysis of co-regulation and inference of dual regulons.Updated 5 years ago

Vinicius S. Chagas, Clarice S. Groeneveld, Kerstin B. Meyer, A. Gordon Robertson, Mauro A. A. Castro.

Rendered from RTNduals.Rmd in RTNduals 1.29.0.
Supporting Material for Trefflich2019Updated 5 years ago

Sheyla Trefflich, Rodrigo J. S. Dalmolin, José M. Ortega, Mauro A. A. Castro.

Rendered from geneplast_Trefflich2019.Rmd in geneplast 1.31.0.